Blastx matches gi|1213537

BLASTX Tue Apr 9 16:49:52 EDT 1996

>gi|1213537 (U50193) coded for by C. elegans cDNA cm02b2;  alternatively
            spliced version of ZK328.5b; similar to nucleoporin and
            DNA-directed RNA polymerase [Caenorhabditis elegans]
            Length = 1166

  Minus Strand HSPs:

 Score = 120 (55.2 bits), Expect = 7.9e-17, Sum P(5) = 7.9e-17
 Identities = 25/58 (43%), Positives = 35/58 (60%), Frame = -3

Query: 22468 TIGRIGYGYIRFLGNTDVRRLDLDHIVKFHRHEVIVYDDESSKPVVGEGLNKAAEVTL 22295
             T+GR  YG + + G  +++ + LD IV F   EV VY +E  K   G+ LN+ AEVTL
Sbjct:   293 TVGRSSYGSVYWPGRVELKDVALDEIVVFRHREVTVYPNEEEKAPEGQELNRPAEVTL 350

 Score = 98 (45.1 bits), Expect = 7.9e-17, Sum P(5) = 7.9e-17
 Identities = 18/38 (47%), Positives = 25/38 (65%), Frame = -3

Query: 22234 LKQSTERQGATFISFDPDNGLWKFFVPHFSRFGLSDDE 22121
             L++ T R GA F  F  + G W F V HFS++GL+DD+
Sbjct:   379 LERQTIRMGAAFKDFRAETGSWVFRVDHFSKYGLADDD 416

 Score = 53 (24.4 bits), Expect = 7.9e-17, Sum P(5) = 7.9e-17
 Identities = 9/28 (32%), Positives = 14/28 (50%), Frame = -3

Query: 21622 VVDAALFMGRSFRAGWGPNGVLFHTGKP 21539
             ++D  +  GRS   GW   G L  + +P
Sbjct:   584 LIDIGIVKGRSSHVGWSETGCLVWSAQP 611

 Score = 49 (22.5 bits), Expect = 7.9e-17, Sum P(5) = 7.9e-17
 Identities = 9/15 (60%), Positives = 10/15 (66%), Frame = -3

Query: 22564 LNSPDYFLKPCINEL 22520
             L  PDYF  P INE+
Sbjct:   263 LTKPDYFSLPTINEM 277

 Score = 38 (17.5 bits), Expect = 7.9e-17, Sum P(5) = 7.9e-17
 Identities = 7/13 (53%), Positives = 11/13 (84%), Frame = -3

Query: 21142 SDNEEDVMQDVKE 21104
             +D EE+++QDV E
Sbjct:  1084 NDAEEELLQDVLE 1096

 Score = 37 (17.0 bits), Expect = 3.4e-17, Sum P(6) = 3.4e-17
 Identities = 7/11 (63%), Positives = 8/11 (72%), Frame = -3

Query: 21214 VMVWELIKVLF 21182
             V VW+LI  LF
Sbjct:   692 VSVWKLISALF 702