The following open reading frames were used in producing the candidate translation product: 22687..21317, 21265..20700, 20645..20144, 20061..19938, 19823..19516. Base positions for candidate proteins encoded on the complementary strand are listed in descending order.
Please note: Alignments are produced from Blastp result files, and may not contain the complete amino acid sequence of the matching proteins. The candidate protein sequence is the top line, Residues that are identical to the candidate protein sequence are represented with an underscore (_), non-identical residues are represented by their single letter character. Conservative substitutions are shown in a blue-green while non-conservative substitutions are in red. Blank spaces in the protein match sequences indicate the end of a high scoring segment. BLASTP Wed Apr 10 16:15:25 EDT 1996
g8261.C.cand.5 1 MSTEISRMARDLDSRKKRRISLDGIAALCEHSKEIIDSLPMLNSPDYFLKPCINELVERE >gi|1213537 _TK____SL_T___M >gi|1213538 _TK____SL_T___M g8261.C.cand.5 61 IESPDYCSRVPDFTIGRIGYGYIRFLGNTDVRRLDLDHIVKFHRHEVIVYDDESSKPVVG >gi|1213537 _V__SS__SVYWP_RVELKDVA__E__V_RHR__T__PN_EE_APE_ >gi|1213538 _V__SS__SVYWP_RVELKDVA__E__V_RHR__T__PN_EE_APE_ >gi|794020 _S______K___S_Y_E_DVNLTN_N__D__HIR_K_____V_DNQ__P__ >gi|1184173 _S______K___S_Y_E_DVNLTN_N__D__HIR_K__V__L_DNQ__P__ >pir||A54831 _SN_V___R___C_T_QHDV_L _E__P__AT__MI_ >gi|496731 _SN_V___R___C_T_QHDV_L _E__P__AT__MI_ g8261.C.cand.5 121 EGLNKAAEVTLVVNIPDLTWGKQQVNHIAYKLKQSTERQGATFISFDPDNGLWKFFVPHF >gi|1213537 QE__RP_____ _ERQ_I_M__A_KD_RAET_S_V_R_D__ >gi|1213538 QE__RP_____ _ERQ_I_M__A_KD_RAET_S_V_R_D__ >gi|794020 ____RK_____ R_EAVSRK___Q_KEYR_ET_S_V_K_S__ >gi|1184173 ____RK_____ R_EAVSRK___Q_KEYR_ET_S_V_K_S__ >pir||A54831 H___VP_II__ Y__YN_FG_T_T_K_N__ >gi|496731 H___VP_II__ Y__YN_FG_T_T_K_N__ g8261.C.cand.5 181 SRFGLSDDEAEDIAMDDAPGLGDPVGLDGKKVADIDEEDQMETSELELSHSLPAHLGLDP >gi|1213537 _KY__A__D >gi|1213538 _KY__A__D >gi|794020 _KY__Q_SDE_E >gi|1184173 _KY__Q_SDE_E >pir||A54831 _IW__VNE_DAE_DE__ __VNEED_E___D_ >gi|496731 _IW__VNE_DAE_DE__ __VNEED_E___D_ g8261.C.cand.5 241 EKMKEMRMLMFPNEDEDESEDFREQTSHLMTSLTKRNVRPSQKIAQRNSHQDPPPVVRKT >gi|1184173 SDE_E_EHPSKTS_KK_K_APLPPASQTTPLQMAL_GKPA___Q_E_ g8261.C.cand.5 301 PLALLEYNPGNDKSSPGSILMVQQNKNLAVRKSKTGGFELDISHVTPLTDNYSRNVVDAA >gi|1213537 LI_IG >gi|1213538 LI_IG g8261.C.cand.5 361 LFMGRSFRAGWGPNGVLFHTGKPICSSSSQMVLSSVINKEKIAIDKVVWDRKGKVQKELI >gi|1213537 IVK___SHV__SET_C_VWSAQ_ >gi|1213538 IVK___SHV__SET_C_VWSAQ_ g8261.C.cand.5 421 DSAFEAPLSLHKELNHVEEEVRFGSFSLKLQNVVTDRLEVAGLSTSAKLFLMHQVMVWEL >gi|1213537 _S__K_ >gi|1213538 _S__K_ g8261.C.cand.5 481 IKVLFSERQSTERLMYAASDNEEDVMQDVKEDSAKIDTEALPLIRRAEFSCWLQESVSHR >gi|1213537 _SA__ N_A__ELL___L_ >gi|1213538 _SA__ N_A__ELL___L_ >pir||A54831 L___NE_TDP_SYPY_T_NDQVKMAL_KKE_HCRLTS_IVSQIGPE >gi|496731 L___NE_TDP_SYPY_T_NDQVKMAL_KKE_HCRLTS_IVSQIGPE g8261.C.cand.5 541 VQEDVSDLNGSSYLEHLFFLLTGRELDSAVELAISKGDVRLACLLSQAGGSTVNRNDILQ >gi|1213537 _P__YFL >gi|1213538 _P__YFL >pir||A54831 IE_KIRNSSNEIEQIF_YL__LLNDVVR_SK___ESKNGH_SV_I_YL_SNDPRIR_LAE >gi|496731 IE_KIRNSSNEIEQIF_YL__LLNDVVR_SK___ESKNGH_SV_I_YL_SNDPRIR_LAE g8261.C.cand.5 601 QLHLWRRNGLDFNFIEKERIKLYELLAGNIHDALQDFTIDWKRFLGSYQLLLNQAKAPWP >gi|1213537 _W_V_ HL_P__TL_C_V_MS_LS_ >gi|1213538 _W_V_ HL_P__TL_C_V_MS_LS_ >pir||A54831 _D_NIS_I_K__S_SPFEG_ >gi|496731 _D_NIS_I_K__S_SPFEG_ g8261.C.cand.5 661 VPIYIDEGPADGFVSDNKHSDILYYLMLLHSKEEEEFGFLQTMFSAFSSTDDPLDYHMIW >gi|1213537 EN_N__FLQ_ >gi|1213538 EN_N__FLQ_ g8261.C.cand.5 721 HHRGILEAVGAFTSDDLHTLDMGFVAQLLSQGLCHWAIYVVLHIPFREDHPYLHVTVIRE >gi|1213537 _V_SL_DRIAR__DN_M _HRNYSS__EASS_SKY_LF_LQ__DDD_E >gi|1213538 _V_SL_DRIAR__DN_M _HRNYSS__EASS_SKY_LF_LQ__DDD_E g8261.C.cand.5 781 ILFQYCETWSSMESQRQFIKDLGIPSEWMHEALAVYYNYHGDFVKALDQFIECANWQRAH >gi|1213537 _TKLLGH__MF_IFRDR_S_GI_RFTIEFDSVD_STQLFELAVAAK_YLEIC >gi|1213538 _TKLLGH__MF_IFRDR_S_GI_RFTIEFDSVD_STQLFELAVAAK_YLEIC >pir||A54831 _K___QLIFN_Q_LKDR_E_NYLSEVQNLLLGSSYDL_E >gi|496731 _K___QSIFN_Q_LKDR_E_NYLSEVQNLLLGSSYDL_E g8261.C.cand.5 841 SIFMTSVAHSLFLSANHSEIWRIATSMDDRKSEIENWDLGAGIYMSFYLLKSSLQEDADT >gi|1213537 RL_VDDI_PTAVVAGD_DALKAACAMVRPFENQ_PE_GATGMV_TDYCR_INLIEN__E >gi|1213538 RL_VDDI_PTAVVAGD_DALKAACAMVRPFENQ_PE_GATGMV_TDYCR_INLIEN__E >pir||A54831 MAIV__LGPR_L__N_ >gi|496731 MAIV__LGPR_L__N_ g8261.C.cand.5 901 MVELVCLRFFIVLYLLTKLIVQHIISCTDDTQQDCLKHWNLHSYDHGHKSLFILDV
Protein match title lines
>gi|1213537 (U50193) coded for by C. elegans cDNA cm02b2; alternatively
score = 120 p value = 3.0e-26
>gi|1213538 (U50193) coded for by C. elegans cDNA yk6a12.3; coded for by C.
score = 120 p value = 6.4e-25
>gi|794020 (L39991) nucleoporin [Rattus norvegicus] >prf||2111257A nucleoporin
score = 181 p value = 2.1e-23
>gi|1184173 (U41815) nucleoporin 98 [Homo sapiens]
score = 179 p value = 1.1e-22
>pir||A54831 nuclear pore complex protein NUP145 - yeast (Saccharomyces
score = 82 p value = 2.4e-13
>gi|496731 (Z32672) nucleoporin [Saccharomyces cerevisiae]
score = 82 p value = 3.1e-13